PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_1B73D2C12.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 79aa    MW: 9097.21 Da    PI: 8.4581
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_1B73D2C12.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.96.3e-1613522059
                           S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY 20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                           + r+YYrC+++gC+vkk+ver+++d ++v+++Yeg Hnh 
  Traes_3AL_1B73D2C12.1 13 HCRNYYRCSTEGCSVKKRVERDKDDANYVVTMYEGVHNHA 52
                           57*************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182907.19E-141254IPR003657WRKY domain
SMARTSM007741.5E-71353IPR003657WRKY domain
PfamPF031061.2E-111351IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-151354IPR003657WRKY domain
PROSITE profilePS5081117.1091554IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
PKILFNLNFI YYHCRNYYRC STEGCSVKKR VERDKDDANY VVTMYEGVHN HASPGTIYYA  60
AQDPASGRFF VTGTHQLAP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-112HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969741.13e-34PREDICTED: probable WRKY transcription factor 57
SwissprotQ93WU99e-20WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBLW5CB116e-55W5CB11_WHEAT; Uncharacterized protein
STRINGSi004464m8e-34(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.15e-21WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]